Index

A

additional_parameters (nitransforms.io.x5.X5Transform attribute) Affine (class in nitransforms.linear) affine (nitransforms.base.ImageGrid property) AFNIDisplacementsField (class in nitransforms.io.afni) AFNILinearTransform (class in nitransforms.io.afni) AFNILinearTransformArray (class in nitransforms.io.afni)

append() (nitransforms.manip.TransformChain method) apply() (nitransforms.base.TransformBase method) (nitransforms.surface.SurfaceResampler method) array_length (nitransforms.io.x5.X5Transform attribute) as_affine() (nitransforms.io.lta.VolumeGeometry method) asaffine() (nitransforms.manip.TransformChain method)

B

BaseLinearTransformList (class in nitransforms.io.base)

BSplineFieldTransform (class in nitransforms.nonlinear)

C

check_sphere() (nitransforms.base.SurfaceMesh method)

coordinates (nitransforms.io.x5.X5Domain attribute)

D

DenseFieldTransform (class in nitransforms.nonlinear) dimension_kinds (nitransforms.io.x5.X5Transform attribute)

DisplacementsField (class in nitransforms.io.base) domain (nitransforms.io.x5.X5Transform attribute)

F

factory() (nitransforms.base.SpatialReference static method) from_binary() (nitransforms.io.itk.ITKLinearTransform class method) (nitransforms.io.itk.ITKLinearTransformArray class method) from_filename() (in module nitransforms.io.x5) (nitransforms.io.base.DisplacementsField class method) (nitransforms.io.base.LinearTransformStruct class method) (nitransforms.io.fsl.FSLLinearTransformArray class method) (nitransforms.io.itk.ITKCompositeH5 class method) (nitransforms.io.itk.ITKLinearTransform class method) (nitransforms.io.itk.ITKLinearTransformArray class method) (nitransforms.linear.Affine class method) (nitransforms.manip.TransformChain class method) (nitransforms.surface.SurfaceCoordinateTransform class method) (nitransforms.surface.SurfaceResampler class method) (nitransforms.surface.SurfaceTransformBase class method) from_fileobj() (nitransforms.io.base.LinearTransformStruct class method) (nitransforms.io.fsl.FSLLinearTransformArray class method) (nitransforms.io.itk.ITKLinearTransform class method) (nitransforms.io.itk.ITKLinearTransformArray class method) from_h5obj() (nitransforms.io.itk.ITKCompositeH5 class method) (nitransforms.io.itk.ITKLinearTransform class method) (nitransforms.io.itk.ITKLinearTransformArray class method) from_image() (nitransforms.io.afni.AFNIDisplacementsField class method) (nitransforms.io.base.DisplacementsField class method) (nitransforms.io.fsl.FSLDisplacementsField class method) (nitransforms.io.itk.ITKDisplacementsField class method) (nitransforms.io.lta.VolumeGeometry class method)

from_matlab_dict() (nitransforms.io.itk.ITKLinearTransform class method) from_matvec() (nitransforms.linear.Affine class method) from_ras() (nitransforms.io.afni.AFNILinearTransform class method) (nitransforms.io.afni.AFNILinearTransformArray class method) (nitransforms.io.base.LinearTransformStruct class method) (nitransforms.io.fsl.FSLLinearTransform class method) (nitransforms.io.fsl.FSLLinearTransformArray class method) (nitransforms.io.itk.ITKLinearTransform class method) (nitransforms.io.itk.ITKLinearTransformArray class method) (nitransforms.io.lta.FSLinearTransform class method) (nitransforms.io.lta.FSLinearTransformArray class method) from_string() (nitransforms.io.afni.AFNILinearTransform class method) (nitransforms.io.afni.AFNILinearTransformArray class method) (nitransforms.io.base.StringBasedStruct class method) (nitransforms.io.fsl.FSLLinearTransform class method) (nitransforms.io.fsl.FSLLinearTransformArray class method) (nitransforms.io.itk.ITKLinearTransform class method) (nitransforms.io.itk.ITKLinearTransformArray class method) (nitransforms.io.lta.FSLinearTransform class method) (nitransforms.io.lta.FSLinearTransformArray class method) (nitransforms.io.lta.VolumeGeometry class method) from_x5() (in module nitransforms.linear) (in module nitransforms.nonlinear) FSLDisplacementsField (class in nitransforms.io.fsl) FSLinearTransform (class in nitransforms.io.lta) FSLinearTransformArray (class in nitransforms.io.lta) FSLLinearTransform (class in nitransforms.io.fsl) FSLLinearTransformArray (class in nitransforms.io.fsl)

G

grid (nitransforms.io.x5.X5Domain attribute)

grid_bspline_weights() (in module nitransforms.interp.bspline)

H

header (nitransforms.base.ImageGrid property)

I

ImageGrid (class in nitransforms.base) index() (nitransforms.base.ImageGrid method) insert() (nitransforms.manip.TransformChain method) inverse (nitransforms.base.ImageGrid property) (nitransforms.io.x5.X5Transform attribute)

is_deltas (nitransforms.nonlinear.DenseFieldTransform property) ITKCompositeH5 (class in nitransforms.io.itk) ITKDisplacementsField (class in nitransforms.io.itk) ITKLinearTransform (class in nitransforms.io.itk) ITKLinearTransformArray (class in nitransforms.io.itk)

J

jacobian (nitransforms.io.x5.X5Transform attribute)

L

LabeledWrapStruct (class in nitransforms.patched) LinearParameters (class in nitransforms.io.base) LinearTransformsMapping (class in nitransforms.linear)

LinearTransformStruct (class in nitransforms.io.base) load() (in module nitransforms.linear) (in module nitransforms.manip)

M

map() (nitransforms.base.TransformBase method) (nitransforms.linear.Affine method) (nitransforms.linear.LinearTransformsMapping method) (nitransforms.manip.TransformChain method) (nitransforms.nonlinear.BSplineFieldTransform method) (nitransforms.nonlinear.DenseFieldTransform method) mapping (nitransforms.io.x5.X5Domain attribute) matrix (nitransforms.linear.Affine property) metadata (nitransforms.io.x5.X5Transform attribute) module nitransforms.base nitransforms.interp nitransforms.interp.bspline nitransforms.io.afni nitransforms.io.base nitransforms.io.fsl nitransforms.io.itk nitransforms.io.lta nitransforms.io.x5 nitransforms.linear nitransforms.manip nitransforms.nonlinear nitransforms.patched nitransforms.surface

N

ndcoords (nitransforms.base.ImageGrid property) (nitransforms.base.SampledSpatialData property) ndim (nitransforms.base.SampledSpatialData property) (nitransforms.base.TransformBase property) (nitransforms.linear.Affine property) (nitransforms.manip.TransformChain property) (nitransforms.nonlinear.BSplineFieldTransform property) (nitransforms.nonlinear.DenseFieldTransform property) ndindex (nitransforms.base.ImageGrid property) nitransforms.base module nitransforms.interp module nitransforms.interp.bspline module nitransforms.io.afni module nitransforms.io.base module

nitransforms.io.fsl module nitransforms.io.itk module nitransforms.io.lta module nitransforms.io.x5 module nitransforms.linear module nitransforms.manip module nitransforms.nonlinear module nitransforms.patched module nitransforms.surface module npoints (nitransforms.base.SampledSpatialData property)

R

ras() (nitransforms.base.ImageGrid method)

reference (nitransforms.base.TransformBase property) representation (nitransforms.io.x5.X5Transform attribute)

S

SampledSpatialData (class in nitransforms.base) set_type() (nitransforms.io.lta.FSLinearTransform method) shape (nitransforms.base.SampledSpatialData property) shape_zoom_affine() (in module nitransforms.patched) size (nitransforms.io.x5.X5Domain attribute) SpatialReference (class in nitransforms.base)

StringBasedStruct (class in nitransforms.io.base) subtype (nitransforms.io.x5.X5Transform attribute) SurfaceCoordinateTransform (class in nitransforms.surface) SurfaceMesh (class in nitransforms.base) SurfaceResampler (class in nitransforms.surface) SurfaceTransformBase (class in nitransforms.surface)

T

to_field() (nitransforms.nonlinear.BSplineFieldTransform method) to_filename() (in module nitransforms.io.x5) (nitransforms.base.TransformBase method) (nitransforms.io.base.DisplacementsField class method) (nitransforms.io.base.LinearTransformStruct method) (nitransforms.io.fsl.FSLLinearTransformArray method) (nitransforms.io.itk.ITKLinearTransform method) (nitransforms.io.itk.ITKLinearTransformArray method) (nitransforms.linear.Affine method) (nitransforms.manip.TransformChain method) (nitransforms.nonlinear.DenseFieldTransform method) (nitransforms.surface.SurfaceCoordinateTransform method) (nitransforms.surface.SurfaceResampler method) to_image() (nitransforms.io.afni.AFNIDisplacementsField class method) (nitransforms.io.base.DisplacementsField class method) (nitransforms.io.fsl.FSLDisplacementsField class method) (nitransforms.io.itk.ITKDisplacementsField class method) to_ras() (nitransforms.io.afni.AFNILinearTransform method) (nitransforms.io.afni.AFNILinearTransformArray method) (nitransforms.io.base.LinearTransformStruct method) (nitransforms.io.fsl.FSLLinearTransform method) (nitransforms.io.fsl.FSLLinearTransformArray method) (nitransforms.io.itk.ITKLinearTransform method) (nitransforms.io.itk.ITKLinearTransformArray method) (nitransforms.io.lta.FSLinearTransform method) (nitransforms.io.lta.FSLinearTransformArray method)

to_string() (nitransforms.io.afni.AFNILinearTransform method) (nitransforms.io.afni.AFNILinearTransformArray method) (nitransforms.io.base.StringBasedStruct method) (nitransforms.io.fsl.FSLLinearTransform method) (nitransforms.io.fsl.FSLLinearTransformArray method) (nitransforms.io.itk.ITKLinearTransform method) (nitransforms.io.itk.ITKLinearTransformArray method) (nitransforms.io.lta.FSLinearTransform method) (nitransforms.io.lta.FSLinearTransformArray method) (nitransforms.io.lta.VolumeGeometry method) to_x5() (nitransforms.linear.Affine method) (nitransforms.nonlinear.BSplineFieldTransform method) (nitransforms.nonlinear.DenseFieldTransform method) transform (nitransforms.io.x5.X5Transform attribute) TransformBase (class in nitransforms.base) TransformChain (class in nitransforms.manip) TransformError TransformFileError TransformIOError transforms (nitransforms.manip.TransformChain property) type (nitransforms.io.x5.X5Transform attribute)

V

VolumeGeometry (class in nitransforms.io.lta)

X

X5Domain (class in nitransforms.io.x5) X5Transform (class in nitransforms.io.x5)

xforms (nitransforms.io.base.BaseLinearTransformList property) (nitransforms.io.itk.ITKLinearTransformArray property)